rs31685194 SNP Detail

Summary

• ID
  rs31685194
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82222878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG GAAGGCTATA GGCCATGTCC
  K
  GTTCCAGGTC CCCGTGTGGG TTCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48077800	NES12072860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G		G	G	G	G		G
ss325034241	CHEV_15_82169107	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31685194					SNP	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077800	NES12072860	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82222878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	within coordinates
Naga	N-acetyl galactosaminidase, alpha	within coordinates
Pheta2	PH domain containing endocytic trafficking adaptor 2	270 bp upstream
Rr506479	regulatory region 506479	95 bp proximal
Rr506480	regulatory region 506480	293 bp proximal
Rr506481	regulatory region 506481	427 bp proximal
Rr506482	regulatory region 506482	1691 bp proximal
Tssr4669	transcription start site region 4669	187 bp downstream
Tssr135542	transcription start site region 135542	1657 bp upstream
Tssr135543	transcription start site region 135543	93 bp downstream
Tssr135544	transcription start site region 135544	124 bp downstream
Tssr135545	transcription start site region 135545	180 bp downstream