rs31685196 SNP Detail

Summary

• ID
  rs31685196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAAAAG CTCCGCCCAT
  CTAAGCTCGC GTTCTGCGCG TTCCCGAGGC GCGCTCCCGT GGGAAGTCGG CTTGGGCGCC
  CTGTGCGCGC GCCGCTGTGC CTCGGGTCTG GTTGGAGTCC TCCGTCCTCC GCCCCAGAGG
  GCGGGGGTGG TGGCCCGCAC TGCCCGTGCT CAGTAAGTAG CTGTGCAGTG AATTCCTACA
  R
  AGGGCGATAC CTTGCTCTTT TTTTGTTTGT TTGTTTGTTT GTTTGTTTGT TTTATTTTGT
  TTTGTTTCTT CGAGACAGGG TTTCTCTGTG TCCTGGAACT CATTCTCTAG ACGAGGTTGG
  CCTCGAACTC AGAAATCCAC CTGAAACCTT GCTCTTAACC ACTCGAAAAC GGTAGTGAAA
  GAGGCTGGGT GGGGTTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48077802	NES12072861	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31685196					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077802	NES12072861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	within coordinates
Cpgi7420	CpG island 7420	1627 bp proximal
Naga	N-acetyl galactosaminidase, alpha	332 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	145 bp distal
Rr506480	regulatory region 506480	within coordinates
Rr506481	regulatory region 506481	within coordinates
Rr506482	regulatory region 506482	1254 bp proximal
Tssr4669	transcription start site region 4669	239 bp upstream
Tssr135543	transcription start site region 135543	323 bp upstream
Tssr135544	transcription start site region 135544	260 bp upstream
Tssr135545	transcription start site region 135545	250 bp upstream