rs31685198 SNP Detail

Summary

• ID
  rs31685198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTCTT AACCACTCGA
  AAACGGTAGT GAAAGAGGCT GGGTGGGGTT TCAGCTCTCG AAAGGTCAGG AGGCTGCCCC
  CTCCACCTGA CACCCAAGGG GTTGTTCGCC CACCCACTCC CCAAATGTAT TTATTCATTA
  CTTATTCATA TGTTAAACAC AGGCTAGGTG CCAACCACTA TTTCTGGATG CCTTTACACC
  R
  ATGATGATCA TAGCTGTCCC CTCTCCGAAT CTGTGCCATT TTCCTCCTAT CAGGTAATGG
  CAAACCGACT TCTCTGCCAA TCTTTTCTCT CAGCCTTTAC ATGCAATTGT CCAAAAATTG
  ATTCCTGCCT TTAAATTCCA CCTCTCATCC CACCCAGTAA CGCTGGCCTC ATTACATATT
  GCCTGGATGA TTCGGAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48077804	NES12072853	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31685198					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077804	NES12072853	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	130 bp distal
Cpgi7420	CpG island 7420	1280 bp proximal
Naga	N-acetyl galactosaminidase, alpha	679 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	492 bp distal
Rr506480	regulatory region 506480	94 bp distal
Rr506481	regulatory region 506481	336 bp distal
Rr506482	regulatory region 506482	907 bp proximal
Rr506483	regulatory region 506483	1729 bp proximal
Tssr4669	transcription start site region 4669	586 bp upstream
Tssr132381	transcription start site region 132381	1738 bp upstream
Tssr135543	transcription start site region 135543	670 bp upstream
Tssr135544	transcription start site region 135544	607 bp upstream
Tssr135545	transcription start site region 135545	597 bp upstream