rs31685199 SNP Detail

Summary

• ID
  rs31685199
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGGCTG CCCCCTCCAC
  CTGACACCCA AGGGGTTGTT CGCCCACCCA CTCCCCAAAT GTATTTATTC ATTACTTATT
  CATATGTTAA ACACAGGCTA GGTGCCAACC ACTATTTCTG GATGCCTTTA CACCGATGAT
  GATCATAGCT GTCCCCTCTC CGAATCTGTG CCATTTTCCT CCTATCAGGT AATGGCAAAC
  S
  GACTTCTCTG CCAATCTTTT CTCTCAGCCT TTACATGCAA TTGTCCAAAA ATTGATTCCT
  GCCTTTAAAT TCCACCTCTC ATCCCACCCA GTAACGCTGG CCTCATTACA TATTGCCTGG
  ATGATTCGGA GACAGCCCTC AAGGGCCTCC TTTGTCCACC TTACTTCTCC AAGGCAGCCA
  AGGCAAACCT GAAAACTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48077806	NES12072854	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31685199					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077806	NES12072854	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	196 bp distal
Cpgi7420	CpG island 7420	1214 bp proximal
Naga	N-acetyl galactosaminidase, alpha	745 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	558 bp distal
Rr506480	regulatory region 506480	160 bp distal
Rr506481	regulatory region 506481	402 bp distal
Rr506482	regulatory region 506482	841 bp proximal
Rr506483	regulatory region 506483	1663 bp proximal
Tssr4669	transcription start site region 4669	652 bp upstream
Tssr132381	transcription start site region 132381	1672 bp upstream
Tssr135543	transcription start site region 135543	736 bp upstream
Tssr135544	transcription start site region 135544	673 bp upstream
Tssr135545	transcription start site region 135545	663 bp upstream