rs31685201 SNP Detail

Summary

• ID
  rs31685201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82223750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCG ACTTCTCTGC CAATCTTTTC
  Y
  CTCAGCCTTT ACATGCAATT GTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48077808	NES12072855	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T		C	T	T	C		T
ss325034248	CHEV_15_82169979	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31685201					SNP	T	T	T	T	T	C	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077808	NES12072855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82223750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	218 bp distal
Cpgi7420	CpG island 7420	1192 bp proximal
Naga	N-acetyl galactosaminidase, alpha	767 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	580 bp distal
Rr506480	regulatory region 506480	182 bp distal
Rr506481	regulatory region 506481	424 bp distal
Rr506482	regulatory region 506482	819 bp proximal
Rr506483	regulatory region 506483	1641 bp proximal
Tssr4669	transcription start site region 4669	674 bp upstream
Tssr132381	transcription start site region 132381	1650 bp upstream
Tssr135543	transcription start site region 135543	758 bp upstream
Tssr135544	transcription start site region 135544	695 bp upstream
Tssr135545	transcription start site region 135545	685 bp upstream