rs31685212 SNP Detail

Summary

• ID
  rs31685212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99770699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCCCAG TCCCCCGCAC
  ACCCGCCTCG CACGGCCCCG CCTTCCCCAC CCCCGTGGTC CTAGCTCCTC ACGATCTTGT
  TCTGGTCCGT GACGAACTCG TCTATGTTTT CTAGATACAG CTGTTCCGCC ATGGTGGTGC
  GGCTTCGAGC CCCGCGCTCA ACCCGCCCCA GCCGTAGCTC CCGCCGGCGG GAAACAGCTT
  Y
  GCTCACTCTC GGGTCACAGG TCGTCTCCCA GGGCAACCAA GGCGCCGCGC TACGGCGGCG
  GGTGAGGGCC AAACTAGTGA GAGGCCAGCC AGGGCTGATG TAGGGGGAAG TTGGAGCGAG
  ACCGACCGGA AGTGAGGCGC GAGCCCGTGG TTGTCGGTGT GCACCTGAGA ACGTTGCGAT
  TTCTCTGCTA CCACAAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47078466	NES11627280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31685212					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078466	NES11627280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99770699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	within coordinates
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	within coordinates
Rr400466	regulatory region 400466	within coordinates
Rr652064	regulatory region 652064	37 bp distal
Rr652065	regulatory region 652065	within coordinates
Tssr73730	transcription start site region 73730	943 bp upstream
Tssr73731	transcription start site region 73731	398 bp upstream
Tssr73732	transcription start site region 73732	50 bp upstream
Tssr73733	transcription start site region 73733	within coordinates
Tssr73734	transcription start site region 73734	20 bp downstream