rs31686142 SNP Detail

Summary

• ID
  rs31686142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135660118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGGGGAC CTACATGAGC TGAGTCTCTC
  TGAGATGTCA GCTGCGAGCA ATGTATTTAC AAGGCGAAGG CTCTCCGTTG TTTTCTCTCT
  TTTAAAAATT CATCAGAATC ATTCAGACTT TTCTGTCCAA CACAGGGCAC AAACAGCTGG
  Y
  TCTGCTCTCA ACGTCATTCC AGACAAAGAG CGGATTCAAT TTGATCATAA CTTAATTATA
  AGGTTTCTTG TACTCATTTA GAAATACTTA AGGAAGTCTA GGGCTGGATG TGGCCCAGCT
  GTAGAGTCTG CATTTAGTCA TGGGTCCCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45058840	mCV23623710	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss145544236	ENSMUSSNP2702964	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss319992771	CHEV_1_137628957	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31686142					SNP	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135660118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Gm70721	predicted gene, 70721			1877 bp upstream
Rr419255	regulatory region 419255			1888 bp distal
Rr419256	regulatory region 419256			1387 bp distal
Rr419257	regulatory region 419257			within coordinates
Rr419258	regulatory region 419258			1655 bp proximal