rs31686154 SNP Detail

Summary

• ID
  rs31686154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82224524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTT GAAGAAAAGT TAGTGAACAT
  Y
  GCAGCCACCA ACCACCACAC TCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48077812	NES12072830	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T		T	T		T
ss325034257	CHEV_15_82170753	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31686154					SNP	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077812	NES12072830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82224524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	992 bp distal
Cpgi7420	CpG island 7420	418 bp proximal
Naga	N-acetyl galactosaminidase, alpha	1541 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2	within coordinates
Rr506479	regulatory region 506479	1354 bp distal
Rr506480	regulatory region 506480	956 bp distal
Rr506481	regulatory region 506481	1198 bp distal
Rr506482	regulatory region 506482	45 bp proximal
Rr506483	regulatory region 506483	867 bp proximal
Tssr4669	transcription start site region 4669	1448 bp upstream
Tssr132381	transcription start site region 132381	876 bp upstream
Tssr135543	transcription start site region 135543	1532 bp upstream
Tssr135544	transcription start site region 135544	1469 bp upstream
Tssr135545	transcription start site region 135545	1459 bp upstream