rs31686306 SNP Detail

Summary

• ID
  rs31686306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99771443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAGTGAG ACGATACACA
  TAAAACCTTC AAGCTGTGCT CACCACGATC ACACTAATAA TAGCTGGTAA CTGTGTTGTT
  ACACGACAAA CATATTGAGC AAGTGCTTTG AAAATGAAAT TTCATTTAGT CTCATAGAAA
  CCCAGCAAAT GCATTGTGTG GTTTTCATAG AGAATCATAA CAGATGCCTG TAAATAAACC
  Y
  AAGATCATGT CAAAGAGATT ACAGTTGTGT CTACAAATAC ACTGAAAGGT TTTAGGGTCA
  AAAACAAATC AGAGAAGAGT ATCCCTTGGA ATTTTCCCTC CCACGAATTA AGAGATGAAG
  AAAGTCTTTT AGTTTCATGT ATATTCCCCA GATATATCAC AATTACTTAC TTACTGAGTA
  ACTAGCATGT GGTGGGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47078472	NES11627282	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31686306					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078472	NES11627282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99771443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	394 bp distal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	734 bp upstream
Rr400466	regulatory region 400466	505 bp downstream
Rr652064	regulatory region 652064	781 bp distal
Rr652065	regulatory region 652065	181 bp distal
Rr652066	regulatory region 652066	1308 bp proximal
Rr652067	regulatory region 652067	1430 bp proximal
Tssr73730	transcription start site region 73730	1687 bp upstream
Tssr73731	transcription start site region 73731	1142 bp upstream
Tssr73732	transcription start site region 73732	794 bp upstream
Tssr73733	transcription start site region 73733	725 bp upstream
Tssr73734	transcription start site region 73734	712 bp upstream