rs31686309 SNP Detail

Summary

• ID
  rs31686309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99771829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGGTGG GCATCTCTAG
  CAGTGACCCT AATCCTCAAG TAGTCTTGTT AGATTTTATT ATCCCTTTAT ACACACACAC
  ACATACAAAA GATGAGGTCC CATCATTTCA AACCACCTTC ATGTTGTTCA TGGGAAGAGT
  GACTAGGAAA CAACTGCAAG GACTTTGAGA CAGGGTTTGT GTAAACAAAA ACTATTTTAA
  R
  TATGATCTTG GGGCCAATGA GATAGCTCAG TGGGTAAAGT GCTTGCAGCA CAGACCTGAT
  GACCTGAGTT CAGTCCCAGG GAGCCACATA AAGATGGCAG GAGAGAACTG ATTCCTTGGA
  GTCATCCTTT GGTCTCCACA CACCATGGTA CATGCAGGCC CATGTATATG CACAAAATAA
  TTAATAAATA AAAATTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47078475	NES11627283	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31686309					SNP	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078475	NES11627283	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99771829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	780 bp distal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	1120 bp upstream
Rr400466	regulatory region 400466	891 bp downstream
Rr652064	regulatory region 652064	1167 bp distal
Rr652065	regulatory region 652065	567 bp distal
Rr652066	regulatory region 652066	922 bp proximal
Rr652067	regulatory region 652067	1044 bp proximal
Rr652068	regulatory region 652068	1641 bp proximal
Rr652069	regulatory region 652069	1774 bp proximal
Tssr73731	transcription start site region 73731	1528 bp upstream
Tssr73732	transcription start site region 73732	1180 bp upstream
Tssr73733	transcription start site region 73733	1111 bp upstream
Tssr73734	transcription start site region 73734	1098 bp upstream