rs31686887 SNP Detail

Summary

• ID
  rs31686887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172034646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG GTTCTCTTAG CTACTTCGCT
  Y
  TGGTATTTAG AAATCCTATT TCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45059345	mCV23614943	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss120007352	PARCsnp_1.17754	PARC_SEQ	INBRED	f	SNP			T	C
ss120010251	PARCsnp_1.07393	PARC_SEQ	INBRED	f	SNP			T	C
ss146183835	ENSMUSSNP2053889	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320123202	CHEV_1_174137210	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31686887					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172034646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	126 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	348 bp upstream
Rr396578	regulatory region 396578	161 bp upstream
Rr423484	regulatory region 423484	1603 bp distal
Rr423485	regulatory region 423485	286 bp distal
Rr423486	regulatory region 423486	within coordinates
Tssr294	transcription start site region 294	446 bp upstream
Tssr295	transcription start site region 295	396 bp upstream
Tssr296	transcription start site region 296	320 bp upstream
Tssr297	transcription start site region 297	286 bp upstream
Tssr15164	transcription start site region 15164	414 bp upstream
Tssr15165	transcription start site region 15165	324 bp upstream
Tssr15166	transcription start site region 15166	293 bp upstream
Tssr15167	transcription start site region 15167	622 bp downstream