rs31686905 SNP Detail

Summary

• ID
  rs31686905
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99772467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGTATAC TAATATATAG
  ATGTCAGATA ACTTGAGTCT TTATCTCAGT TTTATAGAAA CTGTCCAGAG TTAGGTAGTT
  TGCTCCAAGC CACATACATA GCAAGTATGT TTCCGTCCAG GTATGCTAAA ATAATCGCCC
  ACCGTCTCAA AGCTGGGCTT GCTTTGGTGG TAGCATTGGG CTGCCTTTTG TTCTCATCTT
  K
  GTTTTTTTGA GGTTTGGGTT TTTTCTTGTC TTCCAACTGT TTAACTTTTT ACAGATCTAT
  GTGATTTTTT ACAGTTAGAG AAAACAGGAA AGGTGAAGCA CCAAGCAATG GAAAATCAGT
  CCATTGTCTT ATTCCAGATA TCAGAAGGGC TTTCCATATT TTGAGACATG AAATGCAAAT
  GAAGCTAACA CACTTTTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47078484	NES11627286	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31686905					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078484	NES11627286	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99772467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	1418 bp distal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	1758 bp upstream
Rr400466	regulatory region 400466	1529 bp downstream
Rr652064	regulatory region 652064	1805 bp distal
Rr652065	regulatory region 652065	1205 bp distal
Rr652066	regulatory region 652066	284 bp proximal
Rr652067	regulatory region 652067	406 bp proximal
Rr652068	regulatory region 652068	1003 bp proximal
Rr652069	regulatory region 652069	1136 bp proximal
Tssr73732	transcription start site region 73732	1818 bp upstream
Tssr73733	transcription start site region 73733	1749 bp upstream
Tssr73734	transcription start site region 73734	1736 bp upstream