rs31686948 SNP Detail

Summary

• ID
  rs31686948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89813953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT ACCGATGAGA TTTTATGTTG
  Y
  TGCGGCTGCT GCTGCTGAAG CACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss46058033	mCV22978524	ABI	CRAMUS_MOUSE	f	SNP		C				T		C
ss61031655	NES16093383	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C		C	C	C		C
ss145293389	ENSMUSSNP5475096	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss322314343	CHEV_7_97313255	CHEVERUD	SCREENING_POP	f	SNP										C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs31686948					SNP	T	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031655	NES16093383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89813953 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1671 bp downstream
Tssr67721	transcription start site region 67721	1588 bp downstream
Tssr67722	transcription start site region 67722	650 bp downstream
Tssr67723	transcription start site region 67723	760 bp upstream
Tssr67724	transcription start site region 67724	1307 bp upstream
Tssr67725	transcription start site region 67725	1352 bp upstream
Tssr67726	transcription start site region 67726	1365 bp upstream
Tssr67727	transcription start site region 67727	1429 bp upstream