rs31687333 SNP Detail

Summary

• ID
  rs31687333
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:69388413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGTAT ATATGTATAT
  ATGTATGTGT ATGTATGTGT ATGTATATGT ATATATACAC ATACACACAC ATACATACAC
  ATACATACAC ACACACACAT ACACACACAC TATGGCCAAA CAGGAACAAT AAATAGATGT
  CAAATAAACA CTTGTGTCAA AATCTGTCCC TCTATGAAGG AGATGAAGCT AAAAAAAAAA
  W
  GAAAACATGC TGTGAGGAGT TTCTAAACTA AATTGTAAAA TGACACTGAG TAGACATCAG
  GAGAGCAGTA AAGATCAAGA ACAAGGAAAG ATGGGAGCAA AGCCTTTGCA AAAGTCAGTT
  TCAGAACAAC AGACAAATCT ACTCTACTAT AGGCCAGCTG GTAAAATCAA CAATCTCTCT
  TTGAAATTTT ACACACTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49764684	NES12377126	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31687333					SNP	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49764684	NES12377126	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:69388413 () rs orientation: forward

Symbol	Name	Function Class
Ids	iduronate 2-sulfatase	mRNA-UTR
Tssr163512	transcription start site region 163512	522 bp upstream
Tssr163513	transcription start site region 163513	496 bp upstream
Tssr163514	transcription start site region 163514	430 bp upstream
Tssr163515	transcription start site region 163515	159 bp upstream
Tssr163516	transcription start site region 163516	50 bp downstream
Tssr163517	transcription start site region 163517	137 bp downstream
Tssr163518	transcription start site region 163518	445 bp downstream
Tssr163519	transcription start site region 163519	1347 bp downstream