rs31688024 SNP Detail

Summary

• ID
  rs31688024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113364100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG CATCCAGTTG ACGGTGGTAG
  Y
  ACAAGTCACA CCATAGGACT GAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46058285	mCV24770929	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss50460423	NES14119722	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		C		T	T		T	T		T
ss145682731	ENSMUSSNP2275066	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss322424321	CHEV_7_120908377	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31688024					SNP	T	T	T	T	T	C	T	C	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460423	NES14119722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113364100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	769 bp proximal
Rr653859	regulatory region 653859	707 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	1135 bp upstream
Tssr68625	transcription start site region 68625	912 bp upstream
Tssr68626	transcription start site region 68626	974 bp upstream
Tssr68627	transcription start site region 68627	1043 bp upstream
Tssr68628	transcription start site region 68628	1162 bp upstream
Tssr68629	transcription start site region 68629	1181 bp upstream
Tssr68630	transcription start site region 68630	1220 bp upstream
Tssr68631	transcription start site region 68631	1256 bp upstream
Tssr68632	transcription start site region 68632	1378 bp upstream