rs31688723 SNP Detail

Summary

• ID
  rs31688723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36630585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCCCAGT GAAGGGTCAG AGTGTCTCAC
  CTACACATCT TCCAGTACAG TGgtgggtgt gcatgtgtgc atgtgtgcgt gtgtgtCGAG
  GAGAGCAAGC AGAGGAGCTG ACCCTCACTC CACACTGCCA GAGCTGTCAT ATATCACTTC
  Y
  ACTCTGAGAC TTCAGCCCCT CCAACCACTT CTGATTCCAT AGATAAAACC ATTTCTCTTG
  CCACAAAGAT GACAGAAGTG AAACAGGAAG GATGAAGTTT TGAAATTTCA CAACCAGCCC
  CTAAATAGCA CCCCTTACTT CAAAGACAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45059709	mCV25136176	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss47221097	NES11093594	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C	C	C	C		C	C	T	C		C
ss148928402	ENSMUSSNP3204698	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss319689112	CHEV_1_36648349	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31688723					SNP	C	C	T	C	C	C	T	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47221097	NES11093594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36630585 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Tssr11268	transcription start site region 11268	1811 bp downstream