rs31688822 SNP Detail

Summary

• ID
  rs31688822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116698924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT TTTGTTAAGG TTTGCTTAGG
  Y
  ACAGTTTGCA GATAGGTGAA CTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45559571	mCV24793262	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss60435740	NES15935095	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	T		T	C	C	T		T	C		T
ss135675016	ENSMUSSNP2057790	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320896720	CHEV_3_116608193	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31688822					SNP	C	T	C	T	T	T	T	T	C	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435740	NES15935095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116698924 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13742	CpG island 13742			848 bp proximal
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			775 bp distal
Rr583801	regulatory region 583801			1134 bp distal
Rr583802	regulatory region 583802			893 bp distal
Rr583803	regulatory region 583803			693 bp proximal
Tssr31391	transcription start site region 31391			1669 bp downstream
Tssr31392	transcription start site region 31392			1587 bp downstream
Tssr31393	transcription start site region 31393			1560 bp downstream
Tssr31394	transcription start site region 31394			1523 bp downstream
Tssr31395	transcription start site region 31395			877 bp downstream
Tssr31396	transcription start site region 31396			1098 bp upstream