rs31689859 SNP Detail

Summary

• ID
  rs31689859
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122669982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCCTTGG TGAATTTCAG TCACCCCTGG
  AACTGTGTAG GTCCAGGCTG AGGAGGGGGT GAACACCCAG CAGAATGGCC TGTGATGGTA
  CAAGCCCTCT CTTTCCTTTG CATGCAGGGC TGTGCTATAA TTGGTCCAGA ACCTGTCACA
  S
  CCATCCCTGG CTGTGTAACT AATTATCAGT TTCCTTTTGG AGTCAGCTGG TGGACACTGA
  CCCCTCCCTG TTCTGACCTC TCATTTTGCA ACGTTAGATC AAAAGAAAAA AAAAAAAGAT
  CCTCGTgcag ggcctggtga cacacacctt                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47579341	NES11173904	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G	C	C	C		C
ss322846780	CHEV_8_124467143	CHEVERUD	SCREENING_POP	f	SNP							G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31689859					SNP	C	C	C	C	C	C	G	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47579341	NES11173904	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122669982 () rs orientation: forward

Symbol	Name	Function Class
Car5a	carbonic anhydrase 5a, mitochondrial	within coordinates
Rr671979	regulatory region 671979	within coordinates
Rr671980	regulatory region 671980	1651 bp proximal
Tssr83252	transcription start site region 83252	1606 bp downstream
Tssr83253	transcription start site region 83253	1643 bp downstream