rs31689999 SNP Detail

Summary

• ID
  rs31689999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66900988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC TCACTAAGCA GCTCCAAGGA
  R
  GCTTCAAATT CATCATGATC CCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45060195	mCV23098105	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss144520303	ENSMUSSNP5360972	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319758726	CHEV_1_66908403	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31689999					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66900988 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	within coordinates
Cpgi339	CpG island 339	872 bp proximal
Rr412477	regulatory region 412477	within coordinates
Rr412478	regulatory region 412478	421 bp proximal
Rr412479	regulatory region 412479	1438 bp proximal
Tssr12011	transcription start site region 12011	1425 bp downstream
Tssr12012	transcription start site region 12012	1436 bp downstream
Tssr12013	transcription start site region 12013	1466 bp downstream
Tssr12014	transcription start site region 12014	1471 bp downstream
Tssr12015	transcription start site region 12015	1488 bp downstream
Tssr12016	transcription start site region 12016	1512 bp downstream