rs31690139 SNP Detail

Summary

• ID
  rs31690139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44149693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT GCGCTCTCCT CCAGAGACCC
  K
  CGACTGCGAG TTTGGCCGCT GGGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46058077	mCV25287254	ABI	CRAMUS_MOUSE	f	SNP	G	T					G
ss51891395	NES14911134	PERLEGEN	MM_PANEL2	f	SNP		T	G	T	G	G	G	G		G	G	G	G		G
ss149113565	ENSMUSSNP757014	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					G
ss322199069	CHEV_7_51755639	CHEVERUD	SCREENING_POP	f	SNP									G					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31690139					SNP	G	T	G	T	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891395	NES14911134	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44149693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	within coordinates
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	1420 bp upstream
Mybpc2	myosin binding protein C, fast-type	1430 bp downstream
Rr646111	regulatory region 646111	1304 bp proximal
Rr646112	regulatory region 646112	1431 bp proximal
Rr646113	regulatory region 646113	1639 bp proximal