rs31690620 SNP Detail

Summary

• ID
  rs31690620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44837353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCTCA CTTTAATATT
  ATTTTTTAAA GACAGGGTTC CTCTGTGTAT CCGTGGCTCT CCTGGAACTT GCTCTGTAGA
  GCAGGCTGGT CTCGGAGATC CGCCTGCCTC TGCCTCCCCA GCACTGGGAT TAAAGGCATA
  CGCCACCATC ACCATGAAGC TTTTTAAAAC GACATTTCAT GTCTTTCACC ATGAATAAGC
  R
  CATCTTGACA GTTTTTCTAT GGGGCAGCCT GACTTTGTCT GTCCCTTGAG GGCAGGGGTG
  TGTTCTGTTG GCTGGGGCTG GACCCCCCAC CTGCATCAGG CTCTCTGCAA GCTCACTGAG
  TAGACAACAC AGCAAGACAC AGCAAAGGAG CAGAGAGGGT AGAGCCTTGG GGGCCCCTGG
  ACTCCTGTGG CTCAGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46058269	mCV27567943	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss149131033	ENSMUSSNP5051601	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31690620					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44837353 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	969 bp upstream
Kash5	KASH domain containing 5	within coordinates
Rr380751	regulatory region 380751	920 bp downstream
Tssr72334	transcription start site region 72334	771 bp downstream
Tssr72335	transcription start site region 72335	1625 bp downstream
Tssr72336	transcription start site region 72336	1718 bp downstream
Tssr72337	transcription start site region 72337	1742 bp downstream
Tssr72338	transcription start site region 72338	1865 bp downstream