rs31690639 SNP Detail

Summary

• ID
  rs31690639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43448947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCTCCATA CACCCTAAGA GAAGATAATG AAAGAGAAAA
  GTGAGCACAT TAAGTGTTAT GGGGAAGGGG AGGGGGACTG TAAGTAAAGT GCTTGCTTAG
  Y
  AAGTGTGAGG GGCTTTGAGT TCAGATCCCC AGCAACCTTG TTAAAGCCAG CTGTGAGGTG
  GAGACAGGAG GGTTCCAGGG TTTGTCAGTC AACCATCGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46058415	mCV23833712	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss149084124	ENSMUSSNP2543185	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31690639					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43448947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18946	CpG island 18946	1806 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Rr646022	regulatory region 646022	1936 bp distal
Rr646023	regulatory region 646023	1830 bp distal
Rr646024	regulatory region 646024	1206 bp distal
Tssr66051	transcription start site region 66051	1957 bp downstream
Tssr66052	transcription start site region 66052	1937 bp downstream
Tssr66053	transcription start site region 66053	1427 bp downstream
Tssr72173	transcription start site region 72173	1990 bp upstream