rs31691800 SNP Detail

Summary

• ID
  rs31691800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30909349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTCTGGAG GGGCCCTCAA AAAGATCAGA TATATCAGAA
  AGCGTGGATA TAGATTGTGT GTGTGTGTGT CTGTCTGTCT GTCTGTCTGT CTCTCTGTGT
  Y
  TGTCTATCTA TCTGTCTATC TAATGTCATT CATTGTTTTT TACAAAAAGT CATATAGGAT
  TTTCATGGGA TTGAAGTTAC CATTATCAAA GGCTTGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46059003	mCV24560225	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss148703262	ENSMUSSNP4443948	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss322140291	CHEV_7_31994943	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31691800					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30909349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	1347 bp distal
Gm37292	predicted gene, 37292	810 bp downstream
Gm73020	predicted gene, 73020	within coordinates
Rr645057	regulatory region 645057	1572 bp distal
Rr645058	regulatory region 645058	936 bp distal
Rr645059	regulatory region 645059	1396 bp distal
Tssr65856	transcription start site region 65856	1561 bp downstream
Tssr65857	transcription start site region 65857	1534 bp downstream