rs31692443 SNP Detail

Summary

• ID
  rs31692443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9467844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGGCAG CCACCTTGAG
  TCCCTCTTGA TGGAATATAA AACTGTAAGC TGAAACACTC GCCCCATCCA CATGGGTTTA
  GTCAGGGTTT TATACCATCA GCGGAAAATC AAATAGAATA ATCTCCAAAC AAGTGCCCAA
  CTGTGGATCA GTATAGTTGA AATTGCACAT AGAAATCCTA TGGAAAAATT GTATTTTTTA
  Y
  ATTAAACTCT TTGGTTTAGC TTTTATAGCC TTGATTTGAG AAATCCTTTT GGTTTCCCAA
  AGATTCATGC ATTTTATCAC TTAGAACGTT TTGGAGCCTG GACTTGATTC AGTCAAACTC
  TCTTTGAGTC TTTGGCTGGT TTCCACAGTG GGCTATTACC ATTTCCTGCT GCAGGAAGGC
  AGTGCCTTAT GCTGGAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45560410	mCV23607691	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss134574464	ENSMUSSNP3310865	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320650896	CHEV_3_9402784	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31692443					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9467844 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	236 bp upstream
Gm55345	predicted gene, 55345	299 bp downstream
Tssr28343	transcription start site region 28343	210 bp upstream
Tssr28344	transcription start site region 28344	265 bp upstream
Tssr28345	transcription start site region 28345	327 bp upstream