rs31694366 SNP Detail

Summary

• ID
  rs31694366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172042008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTATTTCTA GTTGTGGAGT CACATGAAGG AAGAGACTTG
  TGTGAGTATA GGGCAGGGTT TCTTCGCATC AGCACTGCAG ACGTCGAGGG AGGGGGCGTC
  R
  TGCGCACTGG AGGATGGTTA ATAGTATCTC TGGCCTCTAA TTACTGAATA CCAGCAGCAC
  TCCTCACAGC CAAAAATGTC CTGGAAACCT TGCCTAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45060421	mCV23614839	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss120007500	PARCsnp_1.17828	PARC_SEQ	INBRED	f	SNP			G	A
ss120010412	PARCsnp_1.07473	PARC_SEQ	INBRED	f	SNP			G	A
ss146184095	ENSMUSSNP3408483	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31694366					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172042008 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	755 bp downstream
Rr423487	regulatory region 423487	435 bp distal
Tssr15176	transcription start site region 15176	1366 bp upstream
Tssr15177	transcription start site region 15177	1312 bp upstream
Tssr15178	transcription start site region 15178	1279 bp upstream
Tssr15179	transcription start site region 15179	1263 bp upstream
Tssr15180	transcription start site region 15180	1043 bp upstream
Tssr15181	transcription start site region 15181	480 bp upstream
Tssr15182	transcription start site region 15182	599 bp downstream
Tssr15183	transcription start site region 15183	1540 bp downstream