rs31695861 SNP Detail

Summary

• ID
  rs31695861
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:4023492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA GACCATCGGC CTCCCCACGT
  S
  CTGTACAAGC TATTTATATT TTTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss39316760	mCV23812976	ABI	CRAMUS_MOUSE	f	SNP	G	G	C				C		G
ss49379137	NES12542487	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		G	G	G	G	G	G	C
ss147038800	ENSMUSSNP3844581	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31695861					SNP	G	G	C	C	C	C	C	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49379137	NES12542487	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4023492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	1351 bp proximal
Gm49286	predicted gene, 49286	1915 bp upstream
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	Intron
Rr369897	regulatory region 369897	1080 bp upstream
Rr498628	regulatory region 498628	673 bp proximal
Rr498629	regulatory region 498629	1724 bp proximal
Tssr133595	transcription start site region 133595	1234 bp downstream
Tssr133596	transcription start site region 133596	1698 bp downstream