rs31697332 SNP Detail

Summary

• ID
  rs31697332
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99822089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCAGGGC CTCAGATAAT
  GGCATCAGGA CTAGGTCTTC CTTCTATGGT TAGCTCTGCT AACCTTGGAC GGGTCTCCTC
  TCTGTCCTGC TAAGGGTACA CCTTATATAA CCTTATGCTA AGCACACATT CCATATTACT
  GCCCCCTCCT TTCCTAATGT ATCTCCTCAT ATACGGCCTA CTTGTGATCA GGTTTTGGCC
  W
  GAGAGTCTTT TTTAGGGGGA CCCAAATTCA CGTCGGACAC ATTTGTCTAG TGGGAAAACC
  TGAGTCAGGA CCAGACCTCT GGGTTTTAGT TGCCTCATGT GGGTTTTACA AATATTGAAA
  AACTCTAAGG CACTGCCCCT CCTCCCAGAA GCTGAAGATC TGGTAGGAAA AACCATAATA
  ATTCCTCAAT AATTATGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47079192	NES11625920	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	T	A	A		A
ss322348353	CHEV_7_107321392	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31697332					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47079192	NES11625920	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99822089 () rs orientation: forward

Symbol	Name	Function Class
Gm34821	predicted gene, 34821	within coordinates
Gm39057	predicted gene, 39057	1726 bp upstream
Tssr68095	transcription start site region 68095	425 bp downstream