rs31699777 SNP Detail

Summary

• ID
  rs31699777
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116355176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCGAGATCC TGGGTTCAAA AGGCCCAAGC TCAAATCCTA
  ACGCTCCGAC AGGCCCACCC GCTTCCCTCT GGCTCTGCTC CTACAGATTC TCGGTCCCGC
  S
  GCGTCACGAA ATGGCCCCCA TACCCATTTC TTGAGGAATC AATCATTTTA GAATAGACAT
  TGTTTAGATC TGGAAATCCC CTACTCTCCC CCTTCTCCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45561277	mCV23904183	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss135670058	ENSMUSSNP6509835	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31699777					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116355176 () rs orientation: forward

Symbol	Name	Function Class
Gm9761	predicted gene 9761	101 bp upstream
Gm65478	predicted gene, 65478	within coordinates
Lrrc39	leucine rich repeat containing 39	1446 bp upstream
Rr583740	regulatory region 583740	961 bp proximal
Rr583741	regulatory region 583741	1462 bp proximal
Rr583742	regulatory region 583742	1877 bp proximal
Tssr31355	transcription start site region 31355	1416 bp upstream
Tssr31356	transcription start site region 31356	1438 bp upstream
Tssr31357	transcription start site region 31357	1481 bp upstream
Tssr31358	transcription start site region 31358	1524 bp upstream
Tssr31359	transcription start site region 31359	1537 bp upstream
Tssr35315	transcription start site region 35315	15 bp downstream