rs31700124 SNP Detail

Summary

• ID
  rs31700124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28948827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAGAGTG CTGGGCTTGG
  TGACACACAC CTTTAATTCT AACACTCAGG AGGCAGAGGC AAGTTGAGTT CAAGGCCAGC
  CTGGCCTTAC AGAGTGAGTT CTGTGCCACC CAGCAATATA CCTGACTCAA GAAAATAAGG
  AGGCTGGTGA GGTGGCTCAT TGTGTAGAAT TGCCAGGTTA ATGAGGTGAA TCTAATCACC
  Y
  GGAACCACCT AAGAGAACTC ACGCCTGCAC ACCGTCTTTG GACTTCCACA GGTGCACATC
  CAGGCACGTG CACACAAAAC AAAACACCCA CCTGTATATT CCAAAAGTGA GCGCCCACCT
  CTCAGCAGGA ACAGGTGGCT ACTTCAAGGA TCAAGGTGGC CATGTGCCAC CTTGGATGCC
  TGCTTAATGT CCATTTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46059996	mCV24569328	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss148644071	ENSMUSSNP2006973	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31700124					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28948827 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	935 bp upstream
Cpgi18753	CpG island 18753	1216 bp distal
Gm73451	predicted gene, 73451	1217 bp downstream
Rr644523	regulatory region 644523	1777 bp distal
Rr644524	regulatory region 644524	1837 bp distal
Rr644525	regulatory region 644525	446 bp distal
Rr644526	regulatory region 644526	1421 bp proximal
Tssr65618	transcription start site region 65618	1732 bp downstream
Tssr71636	transcription start site region 71636	1657 bp upstream
Tssr71637	transcription start site region 71637	1463 bp upstream
Tssr71638	transcription start site region 71638	1430 bp upstream
Tssr71639	transcription start site region 71639	978 bp upstream
Tssr71640	transcription start site region 71640	934 bp upstream
Tssr71641	transcription start site region 71641	869 bp upstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	1805 bp downstream