rs31700544 SNP Detail

Summary

• ID
  rs31700544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9618510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCTACAAA GCACAGCGTG AGTACAGGCT
  GCACTGAGGG TGCCTCAGTG CTCGGCAACC CCGCGTGCAC CCAGCTGGGC AGGCAGTCAT
  CATCGGGATA CTTTACAGAA TTCAGAAAAA CCACAGTATT CCCTGGGCTG TCCCTTAAAC
  W
  ATGATAGAAT GGGATGGTGC AATGTGGCCC AGCTACCACT AAGGAGATCT TCCAGAGAAG
  CTAGCCTGCT CTCACAGTGA GACAAGTAGT GTAGACTTTG GTGTCCCTGC GACGACAACA
  TATCGAAGTA ACACGTGTAT GGGTCTATGT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45060985	mCV24092611	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss319630703	CHEV_1_9538366	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31700544					SNP	T	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9618510 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	Intron
Rr407600	regulatory region 407600	1738 bp distal
Rr407602	regulatory region 407602	327 bp distal
Rr407603	regulatory region 407603	within coordinates
Rr407604	regulatory region 407604	881 bp proximal
Rrs1	ribosome biogenesis regulator 1	830 bp downstream
Tssr5898	transcription start site region 5898	184 bp downstream
Tssr5899	transcription start site region 5899	160 bp downstream