rs31700578 SNP Detail

Summary

• ID
  rs31700578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82694265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGCTTT CAACAGGGAT
  CTTATACTCA GACCTTTCTG TAGATGGCTG CTGATTTTGA ACACATTCAA GCTCAATGCC
  TCCACTATCT TGTGGCTTTG GACCCACTGG TTAAGGCATT AGTGATACAA GAGAATGGGC
  CTTACAGGGA AGGGGCCAAA ACAGGAGAGT ATTCCTTGAC CTCCATGACT GGGCCCTGTT
  Y
  GAGAGTTTGT GTATGAATCT TGCCAGCATA GTAAGGTCTG TGGTTGGCTC AATAACTTGT
  AGCAAGGCTC AGTCCTCAAA GTAGCTAAGA GTATTCTATT GTTACTGAAA CCTAGAGCAC
  CTACCCAAAT TGTGGAAGGA TCACATCACA ACTATTCTCT AGTTGAGTCT GTTCTTCATG
  CAAATAAGAC TTTTCAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48079671	NES12086230	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31700578					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48079671	NES12086230	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82694265 () rs orientation: forward

Symbol	Name	Function Class
Rr506522	regulatory region 506522	488 bp proximal
Tcf20	transcription factor 20	within coordinates