rs31700582 SNP Detail

Summary

• ID
  rs31700582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82694397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGGCCT TACAGGGAAG
  GGGCCAAAAC AGGAGAGTAT TCCTTGACCT CCATGACTGG GCCCTGTTTG AGAGTTTGTG
  TATGAATCTT GCCAGCATAG TAAGGTCTGT GGTTGGCTCA ATAACTTGTA GCAAGGCTCA
  GTCCTCAAAG TAGCTAAGAG TATTCTATTG TTACTGAAAC CTAGAGCACC TACCCAAATT
  R
  TGGAAGGATC ACATCACAAC TATTCTCTAG TTGAGTCTGT TCTTCATGCA AATAAGACTT
  TTCAGAACCT ATGGTGGGGA GGTGGGATAG GCCTAGCCCA TTTTCTGAGG CTTGCATAGA
  GCTGGGAGTT TTAATTCTAT TAGTTCTTCA GGAACCTGAG GTACTCAAGA GGCTCTGGGG
  CTTCTCTCAT CTATCATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48079675	NES12086233	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31700582					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48079675	NES12086233	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82694397 () rs orientation: forward

Symbol	Name	Function Class
Rr506522	regulatory region 506522	356 bp proximal
Tcf20	transcription factor 20	within coordinates