rs31701362 SNP Detail

Summary

• ID
  rs31701362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80708274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT TCGGGGTCTC CATTCTCTTA
  R
  CATCCCTTCC ATGCCCGCTC ACACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45561805	mCV25265201	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss135384865	ENSMUSSNP1383471	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320812636	CHEV_3_80604889	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31701362					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80708274 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13280	CpG island 13280			within coordinates
Cpgi13281	CpG island 13281			1543 bp proximal
Gm66511	predicted gene, 66511			within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)			Intron
				Noncoding-Transcript-Variant
Rr578665	regulatory region 578665			708 bp distal
Rr578666	regulatory region 578666			1858 bp proximal
Tssr29615	transcription start site region 29615			435 bp downstream
Tssr29616	transcription start site region 29616			412 bp downstream
Tssr33765	transcription start site region 33765			1623 bp downstream
Tssr33766	transcription start site region 33766			1637 bp downstream
Tssr33767	transcription start site region 33767			1666 bp downstream
Tssr33768	transcription start site region 33768			1684 bp downstream
Tssr33769	transcription start site region 33769			1712 bp downstream
Tssr33770	transcription start site region 33770			1778 bp downstream
Tssr33771	transcription start site region 33771			1822 bp downstream