rs31702444 SNP Detail

Summary

• ID
  rs31702444
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82696765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACAGCTG AACAGACAAC
  CCAAGAAAAA AAATTTACAT TTACATTTCT TTTTTTGTGG GAAGAGTCTA TAAAAAGAAT
  ATTCCAGACA TTAAGACTGG ATACTAGCTC TGTCCTTTTA TTCAATAGGT AACTGCTACA
  ACCTCAACAG ACTTGAGGCC CACTCCACAC AAGGGTCAGG CCTCCTATGA CCAGATACCA
  K
  CCCGGGAAGT ACAGAATACA ACTCACTGTT CTGCTCAGGG TCTGGGGCTG GAGCTGGAAG
  AACCCAAGAA TAAGTAGGAT GACAACCAAG GTCCCAAACA CATGAGTTAC CAAGGTCTGG
  ATTCCAAAAG TCAGGCTACA ATTAAAGACA AAACCAAGTT CCACCTCAGC CAAGCCTTCA
  AGGACACTTA CTTCAAGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48079689	NES12086243	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31702444					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48079689	NES12086243	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82696765 () rs orientation: forward

Symbol	Name	Function Class
Rr506522	regulatory region 506522	1698 bp distal
Tcf20	transcription factor 20	within coordinates
Tssr135582	transcription start site region 135582	1359 bp downstream