rs31702446 SNP Detail

Summary

• ID
  rs31702446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82697775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGACAA TAAAAAACCT
  CCTAGATTTT AGTCTAACCA GGGAAGAGGG CAAACCCAAC AGAGAATGAG CCTGTTGTGG
  CTGTAGGAAC AGAGGACCCT ATTTAGAGAA TTATCCCTCA GAGACAGCTA GTACCTCTGC
  CCACTGGAGC AACAAGGCCT CTGGCCATGT AAGTTCCATT CTCTTCAGCC TACTTTTTCT
  Y
  ATCCTTCAGT GACATGCAGG GCAGAGAGGA CAAAGCAAGC TTCCAGACCC CGTCTCCACT
  AAGCTGCATT CTTATGGCTG TGAGCACACC CATCACAGTT TAATACCTTG ACACCATTAA
  GAATATAGTG AAACTGGATG ATGAAAGTCC AGTAAATCTC ATTTGCCTTG TTTTTTTTGT
  TGCCTTTTTT TTTTTGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48079691	NES12086108	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31702446					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48079691	NES12086108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82697775 () rs orientation: forward

Symbol	Name	Function Class
Rr506523	regulatory region 506523	1164 bp proximal
Rr506524	regulatory region 506524	1266 bp proximal
Rr506525	regulatory region 506525	1368 bp proximal
Tcf20	transcription factor 20	within coordinates
Tssr135582	transcription start site region 135582	349 bp downstream