rs31702485 SNP Detail

Summary

• ID
  rs31702485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90649131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACATTT CCTTCTCATC
  TTGAAGACGT TTACTAAAAT AGAAGGCAGG ACTTAGATGA AAGCTGTGCG AAGAGGACTC
  GAACAAGTCG GAAAGCAATG AGGAAGAGCA AAAATGAGCA AAATAAAAAG GGAAAGATAG
  GTAAAAACAG AAGAGTGATG AGGCGAGATA TCTCATTGAC CCTGATCCTC CTTTTCATCT
  Y
  GCCATTGATT TCTTCTCCCA CTTCCTTTCC GGGCTCTAAG TTCCTACCTT AGAGGATAAA
  CCTTTGAGAT TTATATTACA TATTATTATA TTGTATTATA TTATATATTA TATTATTTAC
  TTTACCCATT GCAGGAAAAA GTCATGACAT ATATATGTTC TCAACAAAAT ATTCTGTCAA
  GCAAAATAGC AGAGTGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596318	NES10455783	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31702485					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596318	NES10455783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90649131 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47136	transcription start site region 47136	1631 bp downstream
Tssr47137	transcription start site region 47137	1569 bp downstream
Tssr47138	transcription start site region 47138	868 bp downstream
Tssr47139	transcription start site region 47139	129 bp upstream
Tssr47140	transcription start site region 47140	158 bp upstream
Tssr47141	transcription start site region 47141	172 bp upstream
Tssr47142	transcription start site region 47142	260 bp upstream
Tssr51784	transcription start site region 51784	247 bp downstream