rs31702488 SNP Detail

Summary

• ID
  rs31702488
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90650302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG ATTTGTGCAG CTCTTAGGAC
  M
  TCATGCCTAA TGGGTTCCGA GGGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45757174	mCV23646177	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				C		A
ss46596321	NES10455700	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	A	A		A	A	A	A		A	C	A		A
ss148814483	ENSMUSSNP6022349	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						A
ss321607438	CHEV_5_90931469	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31702488					SNP	C	C	C	C	A	A	C	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596321	NES10455700	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90650302 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47139	transcription start site region 47139	1022 bp downstream
Tssr47140	transcription start site region 47140	1007 bp downstream
Tssr47141	transcription start site region 47141	912 bp downstream
Tssr47142	transcription start site region 47142	898 bp downstream
Tssr47143	transcription start site region 47143	1120 bp upstream
Tssr47144	transcription start site region 47144	1226 bp upstream
Tssr47145	transcription start site region 47145	1896 bp upstream
Tssr47146	transcription start site region 47146	1910 bp upstream
Tssr51784	transcription start site region 51784	910 bp upstream
Tssr51785	transcription start site region 51785	1914 bp downstream