rs31702489 SNP Detail

Summary

• ID
  rs31702489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90650343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACATTTG TACAAAAGAA
  GTTTTCTGTA CTATAGTCAG CAGGCATGTA TTCATTCTAT TGGCCTTTAA GGGAAGCCAA
  CAGTCAAGTT AACACCTTCC CCTTTCTTGG ATGTTTCTAT GCACTCTATT AGAAGAGAGA
  TTTGTGCAGC TCTTAGGACC TCATGCCTAA TGGGTTCCGA GGGCTTTTCC TAAGCTAAGC
  R
  CCTGATGCTA ATGCAGCAAT CAAAGTAATG GCTCAATCTT CTCGCCAGTA TTCCCAAAAG
  CTGTGGCTCT TTGGCTGCAC TAAAATCAGG TATTCACATG TCATTTGTAC TGCTAAATAA
  AGTTAGGCAA ACTAAAACAA AGACTAGATT TAGGAGGAAC ATCTAGGTGT TTTGTTGGTG
  GTAGAAGTCA AGACTACCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596322	NES10455708	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31702489					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596322	NES10455708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90650343 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47139	transcription start site region 47139	1063 bp downstream
Tssr47140	transcription start site region 47140	1048 bp downstream
Tssr47141	transcription start site region 47141	953 bp downstream
Tssr47142	transcription start site region 47142	939 bp downstream
Tssr47143	transcription start site region 47143	1079 bp upstream
Tssr47144	transcription start site region 47144	1185 bp upstream
Tssr47145	transcription start site region 47145	1855 bp upstream
Tssr47146	transcription start site region 47146	1869 bp upstream
Tssr51784	transcription start site region 51784	951 bp upstream
Tssr51785	transcription start site region 51785	1873 bp downstream