rs31702490 SNP Detail

Summary

• ID
  rs31702490
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90650984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTGTCC CTTCGTCTTT
  GGGTGTCGCC TCTTTTCCTG CCCTCGTCTT TCTTATTTTT CTTCATTGAT TTATCACTAT
  CAAAGAGAGA TGACCCATTT AAGCTTGCGT CTGTCTCCTT AAGAGAGGGG AGGGGAGGTC
  TTTTCTCTTA CATGGCATTA GCTCTTCACT GTTTAAAGCA TACCGTACAC TCTGAAAGCA
  W
  ATTTGTTGGA TAAATGAATG GAAATCTTGC CACTGAAAAG CCATAGCGAG ACACAAAACA
  AAGGGGTATA TTTGTATTGT TCTTCTTTAA TTAAAAATAA TTTCACATGC ATGCATGCAT
  ACATAAGTTT ATACCTAGGT TCTGTATATG AGAGAAAACA TGCAGTTTGT CTGAGCCTGG
  CTTATTCACT TAATGACTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596323	NES10455711	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31702490					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596323	NES10455711	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90650984 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47139	transcription start site region 47139	1704 bp downstream
Tssr47140	transcription start site region 47140	1689 bp downstream
Tssr47141	transcription start site region 47141	1594 bp downstream
Tssr47142	transcription start site region 47142	1580 bp downstream
Tssr47143	transcription start site region 47143	438 bp upstream
Tssr47144	transcription start site region 47144	544 bp upstream
Tssr47145	transcription start site region 47145	1214 bp upstream
Tssr47146	transcription start site region 47146	1228 bp upstream
Tssr47147	transcription start site region 47147	1769 bp upstream
Tssr47148	transcription start site region 47148	1825 bp upstream
Tssr47149	transcription start site region 47149	1841 bp upstream
Tssr51784	transcription start site region 51784	1592 bp upstream
Tssr51785	transcription start site region 51785	1232 bp downstream
Tssr51786	transcription start site region 51786	1845 bp downstream