TTGAG GGACTGCCTT AATAGTTTTG Y TGTTCACAGA ATTCAAATTA TGTTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46596327 | NES10455598 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | T | T | C | T | T | T | C | T | C | C | C | ||
ss321607439 | CHEV_5_90932438 | CHEVERUD | SCREENING_POP | f | SNP | T | C | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs31703344 | SNP | C | C | C | T | T | C | T | T | T | T | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46596327 | NES10455598 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr5:90651271 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Afp | alpha fetoprotein | within coordinates | ||||||
Gm43449 | predicted gene 43449 | within coordinates | ||||||
Tssr47139 | transcription start site region 47139 | 1991 bp downstream | ||||||
Tssr47140 | transcription start site region 47140 | 1976 bp downstream | ||||||
Tssr47141 | transcription start site region 47141 | 1881 bp downstream | ||||||
Tssr47142 | transcription start site region 47142 | 1867 bp downstream | ||||||
Tssr47143 | transcription start site region 47143 | 151 bp upstream | ||||||
Tssr47144 | transcription start site region 47144 | 257 bp upstream | ||||||
Tssr47145 | transcription start site region 47145 | 927 bp upstream | ||||||
Tssr47146 | transcription start site region 47146 | 941 bp upstream | ||||||
Tssr47147 | transcription start site region 47147 | 1482 bp upstream | ||||||
Tssr47148 | transcription start site region 47148 | 1538 bp upstream | ||||||
Tssr47149 | transcription start site region 47149 | 1554 bp upstream | ||||||
Tssr51784 | transcription start site region 51784 | 1879 bp upstream | ||||||
Tssr51785 | transcription start site region 51785 | 945 bp downstream | ||||||
Tssr51786 | transcription start site region 51786 | 1558 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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