rs31703574 SNP Detail

Summary

• ID
  rs31703574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181100839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGTAGAG TGCACTCTTT GTGAAAACAC CCCCGCCCCC
  CGCCCCCCCC CCCGCCCCAG GCCTCGCCTT CACAGAGTAG CAGAGGCTGT CACCCTACAC
  R
  GCAGAACCAT CTTAGATTCC TGTTAGTTCT TAAAGCAAGG CCAGAGCTTA GGACCCCAGG
  GGTGATGCTC TAGGGCAGAG GTGTGCTTGT CCAAGTCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45061110	mCV22694734	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss46725451	NES10651546	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A	G	G	A	A	G	A	A	G
ss146392765	ENSMUSSNP3700032	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31703574					SNP	A	A	G	G	A	A	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46725451	NES10651546	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181100839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1134	CpG island 1134	90 bp distal
Gm39717	predicted gene, 39717	within coordinates
Rr372547	regulatory region 372547	1931 bp downstream
Rr424716	regulatory region 424716	1082 bp distal
Rr424717	regulatory region 424717	within coordinates
Rr424718	regulatory region 424718	204 bp distal
Rr424719	regulatory region 424719	82 bp distal
Rr424720	regulatory region 424720	384 bp proximal