rs31704358 SNP Detail

Summary

• ID
  rs31704358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78135198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA GAACAGCCCT TTCACCTGCA
  R
  CCTGCCCACA TTGCCAGGTA GGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39317155	mCV27572884	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148180840	ENSMUSSNP2222222	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss325024225	CHEV_15_78081428	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31704358					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78135198 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncf4	neutrophil cytosolic factor 4			Coding-NonSynonymous
				mRNA-UTR
Rr505232	regulatory region 505232			811 bp proximal
Rr505233	regulatory region 505233			919 bp proximal
Tssr131902	transcription start site region 131902			369 bp downstream
Tssr131903	transcription start site region 131903			96 bp downstream