GCTGCCTGCT CTTCCACAGG TCCTGAGTTC TATTCTCACC AACCACATGG TAGCCCACAA CCGTCTGTAA TGGGATCTGA TGCCCTCTTC TGGCACACAG W TGTACATGCA GATAGAGCAC TCATACATAA AATAAATCAT AAAAAACAAC AACAACAACA AAAAAGAATG TGTGTAGTAC AAACAGTTTA AGCTTATCT W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
C57BL/6J |
DBA/2J |
---|---|---|---|---|---|---|---|---|
ss45061232 | mCV24495056 | ABI | CRAMUS_MOUSE | f | SNP | A | A | T |
ss146006512 | ENSMUSSNP5882268 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | ||
SNP Consensus Information | ||||||||
SNP | Consensus Type | 129S1/SvImJ |
C57BL/6J |
DBA/2J |
||||
rs31704455 | SNP | A | A | T |
Location: Chr1:165589362 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi955 | CpG island 955 | 1764 bp proximal | ||||||
Creg1 | cellular repressor of E1A-stimulated genes 1 | 1965 bp upstream | ||||||
Rr13809 | regulatory region 13809 | within coordinates | ||||||
Rr28876 | regulatory region 28876 | 1238 bp proximal | ||||||
Rr396502 | regulatory region 396502 | 1745 bp upstream | ||||||
Tssr9817 | transcription start site region 9817 | 1959 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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