rs31704525 SNP Detail

Summary

• ID
  rs31704525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACCCGC CCGGCCCTCG
  GCTTTTCCGG GAGGAAGGCA TATCTCACTC CCGCGTGCAG CCCGCTATGA GACAGAATAG
  AGGGCCTTTA GTGATGGAGT ATGGAGATGA CAGTTGTCGT CATGGAGAAT GTTAGTTAGA
  AAGCTGTGAT CATTACAGGC TGGGAAGGGT GCGGTTAGGG CAACACCGTG CAGGAGTCAG
  W
  AGGAACGAAT TCATTGGAGA CAATACTCGC ATTTGAAGGA CCTAGAGGGG TTCGTGAACC
  TCAGCTCGCT CACCCACTAT CTCATTTTAC TTAAAATAAT CACTACTGAA TTGAAAGAAC
  TAGTTCATCA TAAGGCTCAA GTAACCGCGG CGCGTTGCCC AAACATTTCA TTTACATTCT
  GGATGGTCTT CTGAGGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45561923	mCV24054154	ABI	CRAMUS_MOUSE	f	SNP		T	A			T		T
ss60445519	NES15941790	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		A	T	T	T		T	T		T
ss320920403	CHEV_3_123211966	CHEVERUD	SCREENING_POP	f	SNP											T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31704525					SNP	T	T	A	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445519	NES15941790	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	90 bp distal
Gm9369	predicted pseudogene 9369	894 bp downstream
Rr584524	regulatory region 584524	1994 bp distal
Rr584525	regulatory region 584525	174 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	262 bp proximal
Rr584528	regulatory region 584528	1848 bp proximal
Snhg8	small nucleolar RNA host gene 8	712 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	982 bp upstream
Tssr31551	transcription start site region 31551	480 bp downstream
Tssr31552	transcription start site region 31552	433 bp downstream
Tssr35502	transcription start site region 35502	707 bp upstream
Tssr35503	transcription start site region 35503	119 bp upstream