rs31706334 SNP Detail

Summary

• ID
  rs31706334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90620764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTATTT TCATACTGCA
  TATGTATTGA TAGTGAGAAC TGACAACTGG ACATTTTTTT GTTTTGATGC AGTGATTATA
  TATTCCTTAG AGAGAAGTGT TTAGATGTTG GCATCACTGA GTTGAAAGAG TGTCAAAATT
  TTTTGTCTCT GTGAAAAAAT TTTCTATTAA AATCTTTCAT TCAACTTATC TTTATTACTG
  Y
  GGGCAAAAAC CACAGTAGAA TAAAATTCTA GTGGAGGCCC AATAGAAGAC ACTAAATACC
  AGTTAGTGGA TATAGATAGA AGAACTGGTC ATGGAAATCA TACAAGTATT TATTGCAAGG
  TAGGAATAGT TGATTGAAAA TGTTCCACGT ACATCTACAC AATGGAGTAC TACTCAGCTA
  TTAAAAAGAA TGAATTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596171	NES10456844	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31706334					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596171	NES10456844	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90620764 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123612	regulatory region 123612	1794 bp distal
Rr123613	regulatory region 123613	593 bp distal
Rr123614	regulatory region 123614	292 bp distal
Rr123615	regulatory region 123615	1007 bp proximal
Tssr1538	transcription start site region 1538	785 bp downstream
Tssr1539	transcription start site region 1539	780 bp upstream
Tssr47111	transcription start site region 47111	1085 bp downstream
Tssr47112	transcription start site region 47112	853 bp downstream
Tssr47113	transcription start site region 47113	832 bp downstream
Tssr47114	transcription start site region 47114	797 bp downstream
Tssr47115	transcription start site region 47115	424 bp downstream
Tssr47116	transcription start site region 47116	399 bp downstream
Tssr47117	transcription start site region 47117	366 bp downstream
Tssr47118	transcription start site region 47118	330 bp downstream
Tssr47119	transcription start site region 47119	300 bp downstream
Tssr47120	transcription start site region 47120	1653 bp upstream
Tssr51770	transcription start site region 51770	802 bp upstream
Tssr51771	transcription start site region 51771	344 bp upstream
Tssr51772	transcription start site region 51772	219 bp upstream
Tssr51773	transcription start site region 51773	1706 bp downstream
Tssr51774	transcription start site region 51774	1764 bp downstream