rs31706335 SNP Detail

Summary

• ID
  rs31706335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90621816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAATACCT AATAAAAAAT GGAAAAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAAAAAAAA AGAAAATGTT CCACGAAGAA GCCATGCAGG GGCAAGGCAA
  Y
  GTCATGGGTG TGACTTTTGA GAATGGAGTA AGAAACAGCT GGAAGTGTAC ATAGGAGGTT
  CGAACCCTGC TGAAGGGAGA GGTTCCAATA CTACAAAATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596172	NES10456595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31706335					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596172	NES10456595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90621816 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123613	regulatory region 123613	1645 bp distal
Rr123614	regulatory region 123614	1344 bp distal
Rr123615	regulatory region 123615	within coordinates
Rr123616	regulatory region 123616	1223 bp proximal
Tssr1538	transcription start site region 1538	1837 bp downstream
Tssr1539	transcription start site region 1539	1832 bp upstream
Tssr47112	transcription start site region 47112	1905 bp downstream
Tssr47113	transcription start site region 47113	1884 bp downstream
Tssr47114	transcription start site region 47114	1849 bp downstream
Tssr47115	transcription start site region 47115	1476 bp downstream
Tssr47116	transcription start site region 47116	1451 bp downstream
Tssr47117	transcription start site region 47117	1418 bp downstream
Tssr47118	transcription start site region 47118	1382 bp downstream
Tssr47119	transcription start site region 47119	1352 bp downstream
Tssr47120	transcription start site region 47120	601 bp upstream
Tssr47121	transcription start site region 47121	1307 bp upstream
Tssr51770	transcription start site region 51770	1854 bp upstream
Tssr51771	transcription start site region 51771	1396 bp upstream
Tssr51772	transcription start site region 51772	1271 bp upstream
Tssr51773	transcription start site region 51773	654 bp downstream
Tssr51774	transcription start site region 51774	712 bp downstream
Tssr51775	transcription start site region 51775	1342 bp downstream