rs31706338 SNP Detail

Summary

• ID
  rs31706338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90621924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATAAAAA ATGGAAAAAA
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGAAAATG TTCCACGAAG AAGCCATGCA
  GGGGCAAGGC AACGTCATGG GTGTGACTTT TGAGAATGGA GTAAGAAACA GCTGGAAGTG
  TACATAGGAG GTTCGAACCC TGCTGAAGGG AGAGGTTCCA ATACTACAAA ATGTAGCGGG
  R
  TATTGTCATC ACCTTTGGGG ACATGTCATC ATGGTCCCCA GACAGAGTTA CAAAACTCAT
  CCCCTACACA GCACTATGTC TCTGGTACTG TTTGTTCTAC AGATGTCAAC AACAGAGGCC
  CAGCCATCTC CTATTGCTTG GCTTGTCAGT CTTTCTAGCC TCCCCATTAT TAATTTCAAA
  TGGGGCAGGT GTTAGGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596175	NES10456601	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31706338					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596175	NES10456601	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90621924 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123613	regulatory region 123613	1753 bp distal
Rr123614	regulatory region 123614	1452 bp distal
Rr123615	regulatory region 123615	within coordinates
Rr123616	regulatory region 123616	1115 bp proximal
Tssr1538	transcription start site region 1538	1945 bp downstream
Tssr1539	transcription start site region 1539	1940 bp upstream
Tssr47113	transcription start site region 47113	1992 bp downstream
Tssr47114	transcription start site region 47114	1957 bp downstream
Tssr47115	transcription start site region 47115	1584 bp downstream
Tssr47116	transcription start site region 47116	1559 bp downstream
Tssr47117	transcription start site region 47117	1526 bp downstream
Tssr47118	transcription start site region 47118	1490 bp downstream
Tssr47119	transcription start site region 47119	1460 bp downstream
Tssr47120	transcription start site region 47120	493 bp upstream
Tssr47121	transcription start site region 47121	1199 bp upstream
Tssr51770	transcription start site region 51770	1962 bp upstream
Tssr51771	transcription start site region 51771	1504 bp upstream
Tssr51772	transcription start site region 51772	1379 bp upstream
Tssr51773	transcription start site region 51773	546 bp downstream
Tssr51774	transcription start site region 51774	604 bp downstream
Tssr51775	transcription start site region 51775	1234 bp downstream