rs31706339 SNP Detail

Summary

• ID
  rs31706339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90622104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTACAAA ATGTAGCGGG
  ATATTGTCAT CACCTTTGGG GACATGTCAT CATGGTCCCC AGACAGAGTT ACAAAACTCA
  TCCCCTACAC AGCACTATGT CTCTGGTACT GTTTGTTCTA CAGATGTCAA CAACAGAGGC
  CCAGCCATCT CCTATTGCTT GGCTTGTCAG TCTTTCTAGC CTCCCCATTA TTAATTTCAA
  R
  TGGGGCAGGT GTTAGGAGGG CAAAAATCCA CATATTAAGT GCAAAGCCTT TCAGGAGATT
  TCCTGAAACT AGACAAAACC CGTGTGACTG GCATCGATTA TTCTATTTGA TCTAGCTAGT
  CCTAGCAAAG TGACAACTGC TACTCCCCTC CTACACAGCC AAGATTCCTA AGTTGGCAGT
  GGCATGCTTA ATCCTCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596176	NES10456603	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31706339					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596176	NES10456603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90622104 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123613	regulatory region 123613	1933 bp distal
Rr123614	regulatory region 123614	1632 bp distal
Rr123615	regulatory region 123615	within coordinates
Rr123616	regulatory region 123616	935 bp proximal
Tssr47115	transcription start site region 47115	1764 bp downstream
Tssr47116	transcription start site region 47116	1739 bp downstream
Tssr47117	transcription start site region 47117	1706 bp downstream
Tssr47118	transcription start site region 47118	1670 bp downstream
Tssr47119	transcription start site region 47119	1640 bp downstream
Tssr47120	transcription start site region 47120	313 bp upstream
Tssr47121	transcription start site region 47121	1019 bp upstream
Tssr51771	transcription start site region 51771	1684 bp upstream
Tssr51772	transcription start site region 51772	1559 bp upstream
Tssr51773	transcription start site region 51773	366 bp downstream
Tssr51774	transcription start site region 51774	424 bp downstream
Tssr51775	transcription start site region 51775	1054 bp downstream