rs31706340 SNP Detail

Summary

• ID
  rs31706340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90622417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTCCAAGA TTTATAGCCT TAAACTGTGG CCTCACATTC
  CTTCCTATCT TACTTTCCTG CACTGGGGTA AATGTCTCCT TGCTCTTCTT GCTTTCTGTC
  Y
  TACTGCAGGG CTCTTGCTGA GCTGGTGAAG CACAAGCCCA AGGCTACAGC GGAGCAACTG
  AAGACTGTCA TGGATGACTT TGCACAGTTC CTGGATACAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46596177	NES10456605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31706340					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46596177	NES10456605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90622417 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123614	regulatory region 123614	1945 bp distal
Rr123615	regulatory region 123615	within coordinates
Rr123616	regulatory region 123616	622 bp proximal
Tssr47118	transcription start site region 47118	1983 bp downstream
Tssr47119	transcription start site region 47119	1953 bp downstream
Tssr47120	transcription start site region 47120	within coordinates
Tssr47121	transcription start site region 47121	706 bp upstream
Tssr47122	transcription start site region 47122	1908 bp upstream
Tssr51771	transcription start site region 51771	1997 bp upstream
Tssr51772	transcription start site region 51772	1872 bp upstream
Tssr51773	transcription start site region 51773	53 bp downstream
Tssr51774	transcription start site region 51774	111 bp downstream
Tssr51775	transcription start site region 51775	741 bp downstream
Tssr51776	transcription start site region 51776	1928 bp downstream
Tssr51777	transcription start site region 51777	1956 bp downstream
Tssr51778	transcription start site region 51778	1969 bp downstream