GACCAGGATG GTACCCAGCG GGTACACTGT CCCTTACAAT GCACTGGGCA GTGGCTGTAG CTCACAGGAC AGACCCTTGG GTATGATTCT TCTCTGCACT R ACCATTTGCC CAATCATCCT CCACCTTTTG TGCAATCTCT TTTACCAAGG TAGTCTATGT GACCAGTAAA ATGTGGAAAA AAGACAACAT ACAATTTTCA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss48079951 | NES12084206 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | A | G | G |
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
WSB/EiJ |
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rs31706610 | SNP | G | G | G | G | G | G | G | G | G | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss48079951 | NES12084206 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr15:83250514 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
1700001L05Rik | RIKEN cDNA 1700001L05 gene | within coordinates | ||||||
Cpgi7443 | CpG island 7443 | 446 bp proximal | ||||||
Rr304712 | regulatory region 304712 | 314 bp distal | ||||||
Rr308167 | regulatory region 308167 | 1314 bp distal | ||||||
Rr312191 | regulatory region 312191 | 286 bp proximal | ||||||
Rr314793 | regulatory region 314793 | 1714 bp distal | ||||||
Tssr135657 | transcription start site region 135657 | 658 bp downstream | ||||||
Tssr135658 | transcription start site region 135658 | 693 bp downstream | ||||||
Tssr135659 | transcription start site region 135659 | 926 bp downstream | ||||||
Tssr135660 | transcription start site region 135660 | 954 bp downstream | ||||||
Tssr135661 | transcription start site region 135661 | 984 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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