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rs31706610 SNP Detail
Summary
  • ID
    rs31706610
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:83250514 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GACCAGGATG GTACCCAGCG GGTACACTGT CCCTTACAAT
    GCACTGGGCA GTGGCTGTAG CTCACAGGAC AGACCCTTGG GTATGATTCT TCTCTGCACT
    R
    ACCATTTGCC CAATCATCCT CCACCTTTTG TGCAATCTCT TTTACCAAGG TAGTCTATGT
    GACCAGTAAA ATGTGGAAAA AAGACAACAT ACAATTTTCA                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NZW/LacJ
WSB/EiJ
ss48079951 NES12084206 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G A G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NZW/LacJ
WSB/EiJ
rs31706610 SNP G G G G G G G G G A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss48079951 NES12084206 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:83250514 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700001L05Rik RIKEN cDNA 1700001L05 gene within coordinates
Cpgi7443 CpG island 7443 446 bp proximal
Rr304712 regulatory region 304712 314 bp distal
Rr308167 regulatory region 308167 1314 bp distal
Rr312191 regulatory region 312191 286 bp proximal
Rr314793 regulatory region 314793 1714 bp distal
Tssr135657 transcription start site region 135657 658 bp downstream
Tssr135658 transcription start site region 135658 693 bp downstream
Tssr135659 transcription start site region 135659 926 bp downstream
Tssr135660 transcription start site region 135660 954 bp downstream
Tssr135661 transcription start site region 135661 984 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory